Documentation for output_schemas¶
Bases: TypedDict
Representation of a transcript region
cds_overlaps: list[int]
instance-attribute
¶
List of lengths of CDS overlaps, in the number of bases
five_prime_utr_overlaps: list[int]
instance-attribute
¶
List of lengths of prime 5' UTR overlaps, in the number of bases
flag_contained: bool
instance-attribute
¶
Flag indicating if the transcript is completely contained inside the CNV region
flag_five_inside: bool
instance-attribute
¶
Flag indicating if the transcript start is inside the CNV region. Properly handling +/- strands
flag_three_inside: bool
instance-attribute
¶
Flag indicating if the transcript end is inside the CNV region. Properly handling +/- strands
identifier: str
instance-attribute
¶
Identifier of the transcript
length: int
instance-attribute
¶
Length of the transcript
three_prime_utr_overlaps: list[int]
instance-attribute
¶
List of lengths of prime 3' UTR overlaps, in the number of bases
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